Since I guess maybe my previous post on the subject was too involved, it comes down to as follows:
I want the clans to have some sort of advantage. I'm just so tired of things in these games not making sense. Sudden amnesty so we can all fight pumpkin monsters anyone?
It is a roleplaying game, and I'd like it to start behaving as such.. hell, if they got the guild skill gains by distributing illegal drugs to their clan members that'd work for me.
I'm sure I speak for a small minority. I think that changes, any changes, are given the opportunity to contribute a small detail to the backstory, some do, some don't.
So take the clan skillgain thing all the way. Give the other Omni departments armor. If it was planned to be that simple then I don't see a problem with it.